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SRX24016414: GSM8158834: Control, biological replicate 1; Escherichia coli O157:H7; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 20.4M spots, 1.5G bases, 611.8Mb downloads

External Id: GSM8158834_r1
Submitted by: Biosciences Institute, Newcastle University
Study: Metabolism of L-arabinose converges with virulence regulation to promote enteric pathogen fitness
PRJNA1090487 • SRP497038 • All experiments • All runs
show Abstracthide Abstract
Role of L-arabinose on gene expression in E. coli O157:H7 TUV93-0 where CTRL samples were grown in the absence of L-arabinose and ARA samples were grown in the presence of L-arabinose. Overall design: 3 independent biological replicates were grown in the presence or absence of L-arabinose (total of 6 samples )
Sample: Control, biological replicate 1
SAMN40568863 • SRS20811525 • All experiments • All runs
Organism: Escherichia coli O157:H7
Library:
Name: GSM8158834
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA from samples was prepared using a Monarch Total RNA Miniprep kit (New England Biolabs) following the manufacturer's instruction and treated with TURBO DNAse. Concentrations and quality were assessed using Qubit (ThermoFisher Scientific). Ribosomal depletion and library assembly of DNA-free total RNA samples was carried out using an Illumina Ribo-Zero Tru-seq kit according to the manufacturer's specifications.
Runs: 1 run, 20.4M spots, 1.5G bases, 611.8Mb
Run# of Spots# of BasesSizePublished
SRR2841201920,405,6521.5G611.8Mb2024-03-28

ID:
32322693

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